#include <MUSGmshV4.h>

Collaboration diagram for MUSGmshV4:

Public Member Functions
	MUSGmshV4 (const std::string &meshFile, const std::string &meshExtension)
	~MUSGmshV4 () override
void	initGeometryMonoCPU (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< CellInterface * > &cellInterfaces, SimulationOrder schemeOrder=SimulationOrder::first) override
	initialize the geometry for single CPU computation
void	initGeometryParallel (TypeMeshContainer< Cell * > &, TypeMeshContainer< Cell * > &, TypeMeshContainer< CellInterface * > &, SimulationOrder=SimulationOrder::first) override
	initialize the geometry for multi CPUs computation
void	preProcessMeshFileForParallel () override
	split original mesh file for computation on several CPUs
void	initCpuMeshSequential (TypeMeshContainer< Cell * > &, SimulationOrder &) override
	Initialize mesh of a single partition for restart with mesh mapping option.
void	initCpuMeshParallel (TypeMeshContainer< Cell * > &, SimulationOrder &, int) override
	Initialize mesh of a single partition of a partionned mesh for restart with mesh mapping option.
Public Member Functions inherited from MUSGmsh
	MUSGmsh (const std::string &meshFile, const std::string &meshExtension)
	~MUSGmsh () override
void	initGeometryMonoCPU_common (TypeMeshContainer< Cell * > &cells)
std::string	getMeshExtension () const override
Public Member Functions inherited from MeshUnStruct
	MeshUnStruct (const std::string &meshFile, const std::string &meshExtension)
	~MeshUnStruct () override
void	assignLimits (std::vector< BoundCond * > &boundCond) override
int	initializeGeometrie (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, const int &, bool pretraitementParallele=true, SimulationOrder schemeOrder=SimulationOrder::first) override
	renvoi le number de dimensions (1,2 ou 3)
std::string	whoAmI () const override
void	writeMeshInfoData () const
	write monocpu mesh information
void	writeHeaderPiece (std::ofstream &fileStream, TypeMeshContainer< Cell * > *) const override
size_t	getNodes (std::vector< double > &dataset, std::vector< Cell * > *) const override
	Store coordinates of mesh nodes in a flat vector.
size_t	getConnectivity (std::vector< double > &dataset, std::vector< Cell * > *) const override
	Store connectivities of mesh cells in a flat vector of double.
size_t	getConnectivity (std::vector< int64_t > &dataset, std::vector< Cell * > *) const override
	Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.
size_t	getConnectivity (std::vector< int32_t > &dataset, std::vector< Cell * > *) const override
	Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.
void	getOffsets (std::vector< double > &dataset, std::vector< Cell * > *) const override
	Store offsets in connectivity array of mesh cells.
void	getOffsets (std::vector< int64_t > &dataset, std::vector< Cell * > *) const override
	Store offsets in connectivity array of mesh cells.
void	getOffsets (std::vector< int32_t > &dataset, std::vector< Cell * > *) const override
	Store offsets in connectivity array of mesh cells.
void	getTypeCell (std::vector< double > &dataset, std::vector< Cell * > *) const override
void	getTypeCell (std::vector< unsigned char > &dataset, std::vector< Cell * > *) const override
void	getData (TypeMeshContainer< Cell * > *cellsLvl, std::vector< double > &dataset, const int var, int phase) const override
void	getData (TypeMeshContainer< Cell * > *cellsLvl, std::vector< float > &dataset, const int var, int phase) const override
void	setDataSet (std::vector< double > &dataset, TypeMeshContainer< Cell * > *cellsLvl, const int var, int phase) const override
void	extractAbsVelocityMRF (TypeMeshContainer< Cell * > cellsLvl, std::vector< double > &dataset, Source sourceMRF) const override
void	extractAbsVelocityMRF (TypeMeshContainer< Cell * > cellsLvl, std::vector< float > &dataset, Source sourceMRF) const override
void	extractReferenceLength (std::vector< Cell * > *cellsLvl, std::vector< double > &dataset) const override
void	extractReferenceLength (std::vector< Cell * > *cellsLvl, std::vector< float > &dataset) const override
Public Member Functions inherited from Mesh
	Mesh ()
virtual	~Mesh ()
virtual void	setImmersedBoundaries (TypeMeshContainer< CellInterface * > *, SimulationOrder) const
const int &	getProblemDimension () const
const int &	getNumberCells () const
const int &	getNumberCellsTotal () const
const int &	getNumberFaces () const
const int &	getNumFichier () const
const TypeM &	getType () const
virtual int	getNumberCellsX () const
virtual int	getNumberCellsY () const
virtual int	getNumberCellsZ () const
virtual int	getNumberCellsXGlobal () const
virtual int	getNumberCellsYGlobal () const
virtual int	getNumberCellsZGlobal () const
virtual int	getOffsetX () const
virtual int	getOffsetY () const
virtual int	getOffsetZ () const
virtual int	getNumberCpuX () const
virtual int	getNumberCpuY () const
virtual int	getNumberCpuZ () const
virtual int	getLvlMax () const
void	writeResultsGnuplot (std::vector< Cell * > cellsLvl, std::ofstream &fileStream, GeometricObject objet=0, bool recordPsat=false) const
virtual void	writeHeaderPiece (std::ofstream &, std::vector< Cell * > *) const
virtual std::string	getStringExtent (bool=false) const
virtual std::array< int, 6 >	getArrayGlobalExtent () const
	For structured grid, get global grid extent under the form of an array.
virtual void	getCoord (std::vector< double > &, Axis, bool global=false) const
	For structured grid, get coordinates along a given axis.
virtual void	getData (std::vector< Cell * > *, std::vector< double > &, const int, int) const
	Extracting data for printing results.
virtual void	getData (std::vector< Cell * > *, std::vector< float > &, const int, int) const
virtual void	setDataSet (std::vector< double > &, std::vector< Cell * > *, const int, int) const
	Extracting data for printing results.
virtual void	refineCellAndCellInterfaces (Cell , const std::vector< AddPhys > &, int &)
virtual void	extractAbsVelocityMRF (std::vector< Cell * > , std::vector< double > &, Source ) const
	Extracting absolute velocity for specific Moving Reference Frame computations.
virtual void	extractAbsVelocityMRF (std::vector< Cell * > , std::vector< float > &, Source ) const
virtual void	printDomainDecomposition (std::ofstream &)
virtual void	readDomainDecomposition (std::ifstream &)
virtual void	procedureRaffinementInitialization (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const std::vector< AddPhys > &, int &nbCellsTotalAMR, std::vector< GeometricalDomain * > &, Eos *, const int &, SimulationOrder, std::vector< GeometricalDomain > &)
virtual void	procedureRaffinement (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const int &, const std::vector< AddPhys > &, int &, Eos **)
virtual void	initializePersistentCommunications (const TypeMeshContainer< Cell * > &cells, SimulationOrder schemeOrder)
virtual void	finalizeParallele (const int &lvlMax)
virtual void	parallelLoadBalancingAMR (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , SimulationOrder, const std::vector< AddPhys > &, Eos *, int &, std::vector< GeometricalDomain > &, bool=false)

Private Member Functions
void	readMeshMonoCPU ()
void	readElement (const Coord nodesTable, std::ifstream &meshFile, ElementNS *element, std::vector< std::map< int, int > > &entities, int entityDim, int entityTag, int eltType)
void	readMeshParallel ()

Additional Inherited Members
Static Public Member Functions inherited from MUSGmsh
static std::string	readVersion (const std::string &meshFile)
Static Public Member Functions inherited from MeshUnStruct
static std::string	readMeshFileExtension (const std::string &meshFile)
Protected Member Functions inherited from Mesh
template<typename T>
void	getData_body (Cell *cell, std::vector< T > &dataset, const int var, const int phase, const bool isAMR) const
	Access data of cell cell and append the wanted variable cell in dataset vector.
Protected Attributes inherited from MeshUnStruct
std::string	m_meshFile
	Name of the mesh file read.
std::string	m_nameMesh
	Name of the mesh file without extension.
int	m_numberNodes
	Number of nodes of the geometric domain.
int	m_numberInnerNodes
	Number of inner nodes (except from ghosts).
Coord *	m_nodes
	Array of node coordinates in the geometric domain.
int	m_numberInnerElements
	Number of elements of n dimension of internal compute.
int	m_numberGhostElements
	Number of ghost elements of dimension n for parallel computation.
int	m_numberCommunicatingElements
	Real number of communicating elements.
ElementNS **	m_elements
	Array of internal geometric elements.
FaceNS **	m_faces
	Array of geometrical faces.
std::vector< BoundCond * >	m_bound
	Array of boundary conditions.
int	m_numberInnerFaces
	Number of faces between two cells of compute.
int	m_numberBoundFaces
	Number of faces between a compute cell and a boundary.
int	m_numberFacesParallel
	Number of faces between a compute cell and a ghost cell.
int	m_numberGhostCells
	Number of ghost cells.
int	m_numberElements0D
int	m_numberElements1D
int	m_numberElements2D
int	m_numberElements3D
int	m_numberSegments
int	m_numberTriangles
int	m_numberQuadrangles
int	m_numberTetrahedrons
int	m_numberPyramids
int	m_numberPoints
int	m_numberHexahedrons
double	m_totalSurface
	Sum of 2D element surfaces.
double	m_totalVolume
	Sum of 3D element volumes.
Protected Attributes inherited from Mesh
int	m_numFile
int	m_problemDimension
int	m_numberElements
int	m_numberFacesTotal
int	m_numberCellsCalcul
int	m_numberCellsTotal
TypeM	m_type

Constructor & Destructor Documentation

◆ MUSGmshV4()

MUSGmshV4::MUSGmshV4	(	const std::string &	meshFile,
		const std::string &	meshExtension )

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◆ ~MUSGmshV4()

MUSGmshV4::~MUSGmshV4 ( )

override

Member Function Documentation

◆ initCpuMeshParallel()

void MUSGmshV4::initCpuMeshParallel	(	TypeMeshContainer< Cell * > &	,
		SimulationOrder &	,
		int	)

inlineoverridevirtual

Initialize mesh of a single partition of a partionned mesh for restart with mesh mapping option.

This mesh object has only the elements and nodes filled

Implements MUSGmsh.

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◆ initCpuMeshSequential()

void MUSGmshV4::initCpuMeshSequential	(	TypeMeshContainer< Cell * > &	,
		SimulationOrder &	)

inlineoverridevirtual

Initialize mesh of a single partition for restart with mesh mapping option.

This mesh object has only the elements and nodes filled

Implements MUSGmsh.

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◆ initGeometryMonoCPU()

void MUSGmshV4::initGeometryMonoCPU	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		SimulationOrder	schemeOrder = SimulationOrder::first )

overridevirtual

initialize the geometry for single CPU computation

Parameters

cells
cellInterfaces
schemeOrder	scheme order (currently only first order working)

Implements MUSGmsh.

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◆ initGeometryParallel()

void MUSGmshV4::initGeometryParallel	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< Cell * > &	cellsGhost,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		SimulationOrder	schemeOrder = SimulationOrder::first )

inlineoverridevirtual

initialize the geometry for multi CPUs computation

Parameters

cells
cellInterfaces
schemeOrder	scheme order (currently only first order working)

Implements MUSGmsh.

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◆ preProcessMeshFileForParallel()

void MUSGmshV4::preProcessMeshFileForParallel ( )

inlineoverridevirtual

split original mesh file for computation on several CPUs

Implements MUSGmsh.

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◆ readElement()

void MUSGmshV4::readElement	(	const Coord *	nodesTable,
		std::ifstream &	meshFile,
		ElementNS **	element,
		std::vector< std::map< int, int > > &	entities,
		int	entityDim,
		int	entityTag,
		int	eltType )

private

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◆ readMeshMonoCPU()

void MUSGmshV4::readMeshMonoCPU ( )

private

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◆ readMeshParallel()

void MUSGmshV4::readMeshParallel ( )

inlineprivate

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The documentation for this class was generated from the following files:

/home/runner/work/ECOGEN/ECOGEN/doc_sources/src/Meshes/MeshUnStruct/MUSGmsh/MUSGmshV4/MUSGmshV4.h
/home/runner/work/ECOGEN/ECOGEN/doc_sources/src/Meshes/MeshUnStruct/MUSGmsh/MUSGmshV4/MUSGmshV4.cpp

Public Member Functions

Private Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

◆ MUSGmshV4()

◆ ~MUSGmshV4()

Member Function Documentation

◆ initCpuMeshParallel()

◆ initCpuMeshSequential()

◆ initGeometryMonoCPU()

◆ initGeometryParallel()

◆ preProcessMeshFileForParallel()

◆ readElement()

◆ readMeshMonoCPU()

◆ readMeshParallel()