Abstract class for a mesh. More...

#include <Mesh.h>

Inherited by MeshCartesian, and MeshUnStruct.

Public Member Functions
	Mesh ()
virtual	~Mesh ()
virtual void	assignLimits (std::vector< BoundCond * > &boundCond)=0
virtual int	initializeGeometrie (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, const int &resumeSimulation, bool pretraitementParallele=true, SimulationOrder schemeOrder=SimulationOrder::first)=0
	renvoi le number de dimensions (1,2 ou 3)
virtual std::string	whoAmI () const
virtual void	setImmersedBoundaries (TypeMeshContainer< CellInterface * > *, SimulationOrder) const
const int &	getProblemDimension () const
const int &	getNumberCells () const
const int &	getNumberCellsTotal () const
const int &	getNumberFaces () const
const int &	getNumFichier () const
const TypeM &	getType () const
virtual int	getNumberCellsX () const
virtual int	getNumberCellsY () const
virtual int	getNumberCellsZ () const
virtual int	getNumberCellsXGlobal () const
virtual int	getNumberCellsYGlobal () const
virtual int	getNumberCellsZGlobal () const
virtual int	getOffsetX () const
virtual int	getOffsetY () const
virtual int	getOffsetZ () const
virtual int	getNumberCpuX () const
virtual int	getNumberCpuY () const
virtual int	getNumberCpuZ () const
virtual int	getLvlMax () const
void	writeResultsGnuplot (std::vector< Cell * > cellsLvl, std::ofstream &fileStream, GeometricObject objet=0, bool recordPsat=false) const
virtual void	writeHeaderPiece (std::ofstream &, std::vector< Cell * > *) const
virtual std::string	getStringExtent (bool=false) const
virtual std::array< int, 6 >	getArrayGlobalExtent () const
	For structured grid, get global grid extent under the form of an array.
virtual void	getCoord (std::vector< double > &, Axis, bool global=false) const
	For structured grid, get coordinates along a given axis.
virtual size_t	getNodes (std::vector< double > &, std::vector< Cell * > *) const
	Store coordinates of mesh nodes in a flat vector.
virtual size_t	getConnectivity (std::vector< double > &, std::vector< Cell * > *) const
	Store connectivities of mesh cells in a flat vector of double.
virtual size_t	getConnectivity (std::vector< int64_t > &, std::vector< Cell * > *) const
	Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.
virtual size_t	getConnectivity (std::vector< int32_t > &, std::vector< Cell * > *) const
	Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.
virtual void	getOffsets (std::vector< double > &, std::vector< Cell * > *) const
	Store offsets in connectivity array of mesh cells.
virtual void	getOffsets (std::vector< int64_t > &, std::vector< Cell * > *) const
	Store offsets in connectivity array of mesh cells.
virtual void	getOffsets (std::vector< int32_t > &, std::vector< Cell * > *) const
	Store offsets in connectivity array of mesh cells.
virtual void	getTypeCell (std::vector< double > &, std::vector< Cell * > *) const
virtual void	getTypeCell (std::vector< unsigned char > &, std::vector< Cell * > *) const
virtual void	getData (std::vector< Cell * > *, std::vector< double > &, const int, int) const
	Extracting data for printing results.
virtual void	getData (std::vector< Cell * > *, std::vector< float > &, const int, int) const
virtual void	setDataSet (std::vector< double > &, std::vector< Cell * > *, const int, int) const
	Extracting data for printing results.
virtual void	refineCellAndCellInterfaces (Cell , const std::vector< AddPhys > &, int &)
virtual void	extractAbsVelocityMRF (std::vector< Cell * > , std::vector< double > &, Source ) const
	Extracting absolute velocity for specific Moving Reference Frame computations.
virtual void	extractAbsVelocityMRF (std::vector< Cell * > , std::vector< float > &, Source ) const
virtual void	extractReferenceLength (std::vector< Cell * > *, std::vector< double > &) const
virtual void	extractReferenceLength (std::vector< Cell * > *, std::vector< float > &) const
virtual void	printDomainDecomposition (std::ofstream &)
virtual void	readDomainDecomposition (std::ifstream &)
virtual void	procedureRaffinementInitialization (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const std::vector< AddPhys > &, int &nbCellsTotalAMR, std::vector< GeometricalDomain * > &, Eos *, const int &, SimulationOrder, std::vector< GeometricalDomain > &)
virtual void	procedureRaffinement (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const int &, const std::vector< AddPhys > &, int &, Eos **)
virtual void	initializePersistentCommunications (const TypeMeshContainer< Cell * > &cells, SimulationOrder schemeOrder)
virtual void	finalizeParallele (const int &lvlMax)
virtual void	parallelLoadBalancingAMR (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , SimulationOrder, const std::vector< AddPhys > &, Eos *, int &, std::vector< GeometricalDomain > &, bool=false)
virtual std::string	getMeshExtension () const
virtual void	initCpuMeshSequential (TypeMeshContainer< Cell * > &, SimulationOrder &)
	Initialize mesh of a single partition for restart with mesh mapping option.
virtual void	initCpuMeshParallel (TypeMeshContainer< Cell * > &, SimulationOrder &, int)
	Initialize mesh of a single partition of a partionned mesh for restart with mesh mapping option.

Protected Member Functions
template<typename T>
void	getData_body (Cell *cell, std::vector< T > &dataset, const int var, const int phase, const bool isAMR) const
	Access data of cell cell and append the wanted variable cell in dataset vector.

Protected Attributes
int	m_numFile
int	m_problemDimension
int	m_numberElements
int	m_numberFacesTotal
int	m_numberCellsCalcul
int	m_numberCellsTotal
TypeM	m_type

Detailed Description

Abstract class for a mesh.

Can not be instanciated, depend on the mesh properties

Constructor & Destructor Documentation

◆ Mesh()

Mesh::Mesh ( )

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◆ ~Mesh()

Mesh::~Mesh ( )

virtual

Member Function Documentation

◆ assignLimits()

virtual void Mesh::assignLimits ( std::vector< BoundCond * > & boundCond )

pure virtual

Implemented in MeshCartesian, and MeshUnStruct.

◆ extractAbsVelocityMRF() [1/2]

virtual void Mesh::extractAbsVelocityMRF	(	std::vector< Cell * > *	,
		std::vector< double > &	,
		Source *	) const

inlinevirtual

Extracting absolute velocity for specific Moving Reference Frame computations.

Parameters

cellsLvl	data structure containing pointer to cells
sourceMRF	pointer to the corresponding MRF source
dataset	double vector containing the extracted data

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◆ extractAbsVelocityMRF() [2/2]

virtual void Mesh::extractAbsVelocityMRF	(	std::vector< Cell * > *	,
		std::vector< float > &	,
		Source *	) const

inlinevirtual

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◆ extractReferenceLength() [1/2]

virtual void Mesh::extractReferenceLength	(	std::vector< Cell * > *	,
		std::vector< double > &	) const

inlinevirtual

Reimplemented in MeshUnStruct.

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◆ extractReferenceLength() [2/2]

virtual void Mesh::extractReferenceLength	(	std::vector< Cell * > *	,
		std::vector< float > &	) const

inlinevirtual

Reimplemented in MeshUnStruct.

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◆ finalizeParallele()

void Mesh::finalizeParallele ( const int & lvlMax )

virtual

Reimplemented in MeshCartesianAMR.

◆ getArrayGlobalExtent()

virtual std::array< int, 6 > Mesh::getArrayGlobalExtent ( ) const

inlinevirtual

For structured grid, get global grid extent under the form of an array.

Reimplemented in MeshCartesian.

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◆ getConnectivity() [1/3]

virtual size_t Mesh::getConnectivity	(	std::vector< double > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store connectivities of mesh cells in a flat vector of double.

Returns: Cell count if success, 0 in case of overflow

Note: Check that the cell count doesn't overflow the maximal value representable by a 'size_t'. Don't check that the connectivity values fit in 'double' variables.

Remarks: Method has been kept to not break legacy I/Os but avoiding casts is probably better

Reimplemented in MeshCartesianAMR, and MeshUnStruct.

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◆ getConnectivity() [2/3]

virtual size_t Mesh::getConnectivity	(	std::vector< int32_t > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.

Returns: Cell count if success, 0 in case of overflow

Note: Check that the cell count doesn't overflow the maximal value representable by a 'size_t'. Don't check that the connectivity values fit the vector type.

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ getConnectivity() [3/3]

virtual size_t Mesh::getConnectivity	(	std::vector< int64_t > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store connectivities of mesh cells in a flat vector of 'ECOGEN_VTKHDF_intType' integers.

Returns: Cell count if success, 0 in case of overflow

Note: Check that the cell count doesn't overflow the maximal value representable by a 'size_t'. Don't check that the connectivity values fit the vector type.

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ getCoord()

virtual void Mesh::getCoord	(	std::vector< double > &	,
		Axis	,
		bool	global = false ) const

inlinevirtual

For structured grid, get coordinates along a given axis.

Reimplemented in MeshCartesian.

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◆ getData() [1/2]

virtual void Mesh::getData	(	std::vector< Cell * > *	,
		std::vector< double > &	,
		const int	,
		int	) const

inlinevirtual

Extracting data for printing results.

This method enable to extract a set of data for mixture or phase, scalar or vetor

Parameters

cellsLvl	data structure containing pointer to cells
dataset	double vector containing the extracted data
var	number of requested varaible to extract (>0 for scalar, <0 for vector)
phase	number of requested phase (-1 for mixture, -2 for transport, -3 for xi, -4 for gradient density mixture)

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◆ getData() [2/2]

virtual void Mesh::getData	(	std::vector< Cell * > *	,
		std::vector< float > &	,
		const int	,
		int	) const

inlinevirtual

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◆ getData_body()

template<typename T>

template void Mesh::getData_body< float >	(	Cell *	cell,
		std::vector< T > &	dataset,
		const int	var,
		const int	phase,
		const bool	isAMR ) const

protected

Access data of cell cell and append the wanted variable cell in dataset vector.

Instanciation of previous function with float type to force compilation of the function body and avoid link error.

Instanciation of previous function with double type to force compilation of the function body and avoid link error.

Template Parameters

T	Type of dataset vector.

Parameters

cellsLvl	Cell array.
dataset	Vector to fill with cell array variable.
var	parameter to choose to get scalar (if strictly positive) or vector (in lower or ewal to 0) variable.
phase	identifier of variable to store.
isAMR	true if called from AMR.

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◆ getLvlMax()

virtual int Mesh::getLvlMax ( ) const

inlinevirtual

Reimplemented in MeshCartesianAMR.

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◆ getMeshExtension()

virtual std::string Mesh::getMeshExtension ( ) const

inlinevirtual

Reimplemented in MUSGmsh.

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◆ getNodes()

virtual size_t Mesh::getNodes	(	std::vector< double > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store coordinates of mesh nodes in a flat vector.

Returns: Node count if success, 0 in case of overflow

Note: Check that the node count doesn't overflow the maximal value representable by a 'size_t'

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ getNumberCells()

const int & Mesh::getNumberCells ( ) const

inline

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◆ getNumberCellsTotal()

const int & Mesh::getNumberCellsTotal ( ) const

inline

◆ getNumberCellsX()

virtual int Mesh::getNumberCellsX ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCellsXGlobal()

virtual int Mesh::getNumberCellsXGlobal ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCellsY()

virtual int Mesh::getNumberCellsY ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCellsYGlobal()

virtual int Mesh::getNumberCellsYGlobal ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCellsZ()

virtual int Mesh::getNumberCellsZ ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCellsZGlobal()

virtual int Mesh::getNumberCellsZGlobal ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getNumberCpuX()

virtual int Mesh::getNumberCpuX ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

◆ getNumberCpuY()

virtual int Mesh::getNumberCpuY ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

◆ getNumberCpuZ()

virtual int Mesh::getNumberCpuZ ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

◆ getNumberFaces()

const int & Mesh::getNumberFaces ( ) const

inline

◆ getNumFichier()

const int & Mesh::getNumFichier ( ) const

inline

◆ getOffsets() [1/3]

virtual void Mesh::getOffsets	(	std::vector< double > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store offsets in connectivity array of mesh cells.

Note: Check that the max offset doesn't overflow the maximal integer exactly representable by a 'double'.

Remarks: Method has been kept to not break legacy I/Os but avoiding casts is probably better

Reimplemented in MeshCartesianAMR, and MeshUnStruct.

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◆ getOffsets() [2/3]

virtual void Mesh::getOffsets	(	std::vector< int32_t > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store offsets in connectivity array of mesh cells.

Note: Check that the max offset doesn't overflow the maximal value representable by a int32_t variable.

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ getOffsets() [3/3]

virtual void Mesh::getOffsets	(	std::vector< int64_t > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Store offsets in connectivity array of mesh cells.

Note: Check that the max offset doesn't overflow the maximal value representable by a int64_t variable.

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ getOffsetX()

virtual int Mesh::getOffsetX ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getOffsetY()

virtual int Mesh::getOffsetY ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getOffsetZ()

virtual int Mesh::getOffsetZ ( ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getProblemDimension()

const int & Mesh::getProblemDimension ( ) const

inline

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◆ getStringExtent()

virtual std::string Mesh::getStringExtent ( bool = false ) const

inlinevirtual

Reimplemented in MeshCartesian.

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◆ getType()

const TypeM & Mesh::getType ( ) const

inline

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◆ getTypeCell() [1/2]

virtual void Mesh::getTypeCell	(	std::vector< double > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Reimplemented in MeshCartesianAMR, and MeshUnStruct.

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◆ getTypeCell() [2/2]

virtual void Mesh::getTypeCell	(	std::vector< unsigned char > &	,
		std::vector< Cell * > *	) const

inlinevirtual

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ initCpuMeshParallel()

virtual void Mesh::initCpuMeshParallel	(	TypeMeshContainer< Cell * > &	,
		SimulationOrder &	,
		int	)

inlinevirtual

Initialize mesh of a single partition of a partionned mesh for restart with mesh mapping option.

This mesh object has only the elements and nodes filled

Reimplemented in MeshUnStruct, MUSGmsh, MUSGmshV2, and MUSGmshV4.

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◆ initCpuMeshSequential()

virtual void Mesh::initCpuMeshSequential	(	TypeMeshContainer< Cell * > &	,
		SimulationOrder &	)

inlinevirtual

Initialize mesh of a single partition for restart with mesh mapping option.

This mesh object has only the elements and nodes filled

Reimplemented in MeshUnStruct, MUSGmsh, MUSGmshV2, and MUSGmshV4.

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◆ initializeGeometrie()

virtual int Mesh::initializeGeometrie	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< Cell * > &	cellsGhost,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		const int &	resumeSimulation,
		bool	pretraitementParallele = true,
		SimulationOrder	schemeOrder = SimulationOrder::first )

pure virtual

renvoi le number de dimensions (1,2 ou 3)

Implemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

◆ initializePersistentCommunications()

void Mesh::initializePersistentCommunications	(	const TypeMeshContainer< Cell * > &	cells,
		SimulationOrder	schemeOrder )

virtual

Reimplemented in MeshCartesianAMR.

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◆ parallelLoadBalancingAMR()

virtual void Mesh::parallelLoadBalancingAMR	(	std::vector< Cell * > *	,
		TypeMeshContainer< Cell * > *	,
		std::vector< CellInterface * > *	,
		SimulationOrder	,
		const std::vector< AddPhys * > &	,
		Eos **	,
		int &	,
		std::vector< GeometricalDomain * > &	,
		bool	= false )

inlinevirtual

◆ printDomainDecomposition()

virtual void Mesh::printDomainDecomposition ( std::ofstream & )

inlinevirtual

Reimplemented in MeshCartesianAMR.

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◆ procedureRaffinement()

virtual void Mesh::procedureRaffinement	(	std::vector< Cell * > *	,
		TypeMeshContainer< Cell * > *	,
		std::vector< CellInterface * > *	,
		const int &	,
		const std::vector< AddPhys * > &	,
		int &	,
		Eos **	)

inlinevirtual

◆ procedureRaffinementInitialization()

virtual void Mesh::procedureRaffinementInitialization	(	std::vector< Cell * > *	,
		TypeMeshContainer< Cell * > *	,
		std::vector< CellInterface * > *	,
		const std::vector< AddPhys * > &	,
		int &	nbCellsTotalAMR,
		std::vector< GeometricalDomain * > &	,
		Eos **	,
		const int &	,
		SimulationOrder	,
		std::vector< GeometricalDomain * > &	)

inlinevirtual

◆ readDomainDecomposition()

virtual void Mesh::readDomainDecomposition ( std::ifstream & )

inlinevirtual

Reimplemented in MeshCartesianAMR.

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◆ refineCellAndCellInterfaces()

virtual void Mesh::refineCellAndCellInterfaces	(	Cell *	,
		const std::vector< AddPhys * > &	,
		int &	)

inlinevirtual

Reimplemented in MeshCartesianAMR.

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◆ setDataSet()

virtual void Mesh::setDataSet	(	std::vector< double > &	,
		std::vector< Cell * > *	,
		const int	,
		int	) const

inlinevirtual

Extracting data for printing results.

This method enable to extract a set of data for mixture or phase, scalar or vetor

Parameters

cellsLvl	data structure containing pointer to cells
dataset	double vector containing the extracted data
var	number of requested varaible to extract (>0 for scalar, <0 for vector)
phase	number of requested phase (-1 for mixture, -2 for transport, -3 for xi, -4 for gradient density mixture)

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◆ setImmersedBoundaries()

virtual void Mesh::setImmersedBoundaries	(	TypeMeshContainer< CellInterface * > *	,
		SimulationOrder	) const

inlinevirtual

Reimplemented in MeshCartesian.

◆ whoAmI()

virtual std::string Mesh::whoAmI ( ) const

inlinevirtual

Reimplemented in MeshCartesian, MeshCartesianAMR, and MeshUnStruct.

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◆ writeHeaderPiece()

virtual void Mesh::writeHeaderPiece	(	std::ofstream &	,
		std::vector< Cell * > *	) const

inlinevirtual

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◆ writeResultsGnuplot()

void Mesh::writeResultsGnuplot	(	std::vector< Cell * > *	cellsLvl,
		std::ofstream &	fileStream,
		GeometricObject *	objet = 0,
		bool	recordPsat = false ) const

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Member Data Documentation

◆ m_numberCellsCalcul

int Mesh::m_numberCellsCalcul

protected

◆ m_numberCellsTotal

int Mesh::m_numberCellsTotal

protected

◆ m_numberElements

int Mesh::m_numberElements

protected

◆ m_numberFacesTotal

int Mesh::m_numberFacesTotal

protected

◆ m_numFile

int Mesh::m_numFile

mutableprotected

◆ m_problemDimension

int Mesh::m_problemDimension

protected

◆ m_type

TypeM Mesh::m_type

protected

The documentation for this class was generated from the following files:

/home/runner/work/ECOGEN/ECOGEN/doc_sources/src/Meshes/Mesh.h
/home/runner/work/ECOGEN/ECOGEN/doc_sources/src/Meshes/Mesh.cpp

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ Mesh()

◆ ~Mesh()

Member Function Documentation

◆ assignLimits()

◆ extractAbsVelocityMRF() [1/2]

◆ extractAbsVelocityMRF() [2/2]

◆ extractReferenceLength() [1/2]

◆ extractReferenceLength() [2/2]

◆ finalizeParallele()

◆ getArrayGlobalExtent()

◆ getConnectivity() [1/3]

◆ getConnectivity() [2/3]

◆ getConnectivity() [3/3]

◆ getCoord()

◆ getData() [1/2]

◆ getData() [2/2]

◆ getData_body()

◆ getLvlMax()

◆ getMeshExtension()

◆ getNodes()

◆ getNumberCells()

◆ getNumberCellsTotal()

◆ getNumberCellsX()

◆ getNumberCellsXGlobal()

◆ getNumberCellsY()

◆ getNumberCellsYGlobal()

◆ getNumberCellsZ()

◆ getNumberCellsZGlobal()

◆ getNumberCpuX()

◆ getNumberCpuY()

◆ getNumberCpuZ()

◆ getNumberFaces()

◆ getNumFichier()

◆ getOffsets() [1/3]

◆ getOffsets() [2/3]

◆ getOffsets() [3/3]

◆ getOffsetX()

◆ getOffsetY()

◆ getOffsetZ()

◆ getProblemDimension()

◆ getStringExtent()

◆ getType()

◆ getTypeCell() [1/2]

◆ getTypeCell() [2/2]

◆ initCpuMeshParallel()

◆ initCpuMeshSequential()

◆ initializeGeometrie()

◆ initializePersistentCommunications()

◆ parallelLoadBalancingAMR()

◆ printDomainDecomposition()

◆ procedureRaffinement()

◆ procedureRaffinementInitialization()

◆ readDomainDecomposition()

◆ refineCellAndCellInterfaces()

◆ setDataSet()

◆ setImmersedBoundaries()

◆ whoAmI()

◆ writeHeaderPiece()

◆ writeResultsGnuplot()

Member Data Documentation

◆ m_numberCellsCalcul

◆ m_numberCellsTotal

◆ m_numberElements

◆ m_numberFacesTotal

◆ m_numFile

◆ m_problemDimension

◆ m_type