#include <OutputGNU.h>

Inherits Output.

Inherited by OutputBoundaryGNU, OutputCutGNU, OutputGlobalGNU, and OutputProbeGNU.

Public Member Functions
	OutputGNU ()
	Default constructor for specific output without specific needs.

	OutputGNU (std::string casTest, std::string run, tinyxml2::XMLElement element, std::string fileName, Input entree)
	Main constructor for datasets.

	OutputGNU (tinyxml2::XMLElement *element)
	Constructor for specific derived GNU outputs (boundary, probe, cut)

virtual	~OutputGNU ()

virtual void	initializeSpecificOutput ()

virtual void	initializeSpecificOutput (std::vector< CellInterface * > *)

virtual void	writeResults (Mesh mesh, std::vector< Cell > *cellsLvl)

virtual void	writeResults (std::vector< CellInterface * > *)

Public Member Functions inherited from Output
	Output ()
	Default constructor for specific output without specific needs.

	Output (std::string casTest, std::string nameRun, tinyxml2::XMLElement element, std::string fileName, Input entree)
	Main constructor for datasets used for OutputXML and OutputGNU according to outputMode.

	Output (std::string nameRun, int fileNumberRestartMeshMapping, Input *input)
	Constructor for datasets used for OutputXML when mesh mapping restart option is activated.

	Output (tinyxml2::XMLElement *element)
	Constructor for specific derived GNU outputs (boundary, probe, cut)

virtual	~Output ()

virtual void	locateProbeInMesh (const TypeMeshContainer< Cell * > &, const int &, bool=false)

virtual Cell *	locateProbeInAMRSubMesh (std::vector< Cell * > *, const int &)

void	copyInputFiles () const

void	initializeOutput (const Cell &cell)

void	initializeOutput (std::vector< CellInterface * > *cellInterfacesLvl)
	To initialize OutputBoundaryMassflowGNU.

void	initializeOutputMeshMapping (const Cell &cell)
	To initialize output for Mesh Mapping Restart.

virtual void	initializeOutputInfos ()

void	printTree (Mesh mesh, std::vector< Cell > *cellsLvl, int m_restartAMRsaveFreq)

virtual void	writeInfos ()

virtual void	writeProgress ()

void	saveInfoCells () const

void	readInfos ()
	Currently only used for OutputBoundaryMassflowGNU.

int	readNbCpu ()
	Read and return the number of cpu from the infoCalcul file of a performed simulation.

virtual void	readResults (Mesh , std::vector< Cell > *)
	Read results of a previous simulation to restart from it.

virtual void	readResultsCpu (Mesh , std::vector< Cell > *, int)
	Read results of a single partition of a previous simulation to restart from it.

void	readDomainDecompostion (Mesh *mesh)

void	readTree (Mesh mesh, TypeMeshContainer< Cell > cellsLvl, TypeMeshContainer< Cell > cellsLvlGhost, TypeMeshContainer< CellInterface > cellInterfacesLvl, const std::vector< AddPhys > &addPhys, int &nbCellsTotalAMR)

int	getNumFile () const

virtual double	getNextTime ()

virtual bool	possesses ()

const std::string &	getFolderOutput ()

const TypeOutput &	getType () const

bool	getReducedOutput () const

Protected Member Functions
void	writeScriptGnuplot (const int &dim)

void	writeScriptGnuplot (const std::string &varName)

std::string	createFilenameGNU (const char *name, int lvl=-1, int proc=-1, int numFichier=-1, std::string nameVariable="defaut") const

void	printBlocGnuplot (std::ofstream &fileStream, int &index, const int &dim)

std::string	formatVarNameStyle (std::string const &strToFormat) const

Protected Member Functions inherited from Output
void	printWritingInfo () const

void	saveInfos () const

std::string	createFilename (const char *name, int lvl=-1, int proc=-1, int numFichier=-1) const

void	writeDataset (std::vector< double > dataset, std::ofstream &fileStream, TypeData typeData)

void	getDataset (std::istringstream &data, std::vector< double > &dataset)

Protected Attributes
std::string	m_fileNameVisu

std::string	m_folderScriptGnuplot

Protected Attributes inherited from Output
Input *	m_input
	Pointer to input.

Run *	m_run
	Pointer to run.

TypeOutput	m_type
	Type of output.

std::string	m_simulationName
	Test case name (defined in "main.xml")

std::string	m_infoCalcul
	Filename to save useful info of computation.

std::string	m_infoMesh
	Filename of mesh info file.

std::string	m_treeStructure
	Filename for tree structure backup.

std::string	m_domainDecomposition
	Filename for domain decomposition backup.

std::string	m_fileNameResults
	Filename of result file.

std::string	m_filenameCollectionParaview
	Name of the collection containing the results files (for Paraview)

std::string	m_filenameCollectionVisIt
	Name of the collection containing the results files (for VisIt)

std::string	m_folderOutput
	Folder to store results.

std::string	m_folderSavesInput
	Folder to store a copy of input files.

std::string	m_folderDatasets
	Folder to save the datasets.

std::string	m_folderInfoMesh
	Folder to store mesh info.

std::string	m_folderCuts
	Cuts results folder location.

std::string	m_folderProbes
	Probes results folder location.

std::string	m_folderGlobalQuantities
	Global quantity (e.g. mass) results folder location.

std::string	m_folderBoundaries
	Boundaries flux results folder location.

std::string	m_fileCollectionParaview
	Chemin du file collection regroupant les fichiers resultats (for Paraview)

std::string	m_fileCollectionVisIt
	Chemin du file collection regroupant les fichiers resultats (for VisIt)

std::string	m_folderErrorsAndWarnings
	File path for errors and warnings.

bool	m_writeBinary
	Choice to write binary/ASCII.

bool	m_splitData
	Choice print data in separate files.

int	m_precision
	Output files precision (number of digits) //default: 0.

bool	m_reducedOutput
	Choice of reduced number of output variables when possible (depends on the model)

int	m_numFichier

std::string	m_endianMode

int	m_nbCpusRestarted
	Number of CPUs of the simulation to be restarted.

Cell	m_cellRef
	Reference cell to extract variables name.

Constructor & Destructor Documentation

◆ OutputGNU() [1/3]

OutputGNU::OutputGNU ( )

Default constructor for specific output without specific needs.

◆ OutputGNU() [2/3]

OutputGNU::OutputGNU	(	std::string	casTest,
		std::string	run,
		tinyxml2::XMLElement *	element,
		std::string	fileName,
		Input *	entree
	)

Main constructor for datasets.

Parameters

casTest	Test case name (defined in "main.xml")
nameRun	Folder to store results
element	XML outputMode element
fileName	Full path to main.xml of current test case
entree	Input pointer to access run pointer and its information

◆ OutputGNU() [3/3]

OutputGNU::OutputGNU ( tinyxml2::XMLElement * element )

Constructor for specific derived GNU outputs (boundary, probe, cut)

Parameters

element XML GNU output element to get stream precision

◆ ~OutputGNU()

OutputGNU::~OutputGNU ( )

virtual

Member Function Documentation

◆ createFilenameGNU()

std::string OutputGNU::createFilenameGNU	(	const char *	name,
		int	lvl = `-1`,
		int	proc = `-1`,
		int	numFichier = `-1`,
		std::string	nameVariable = `"defaut"`
	)		const

protected

◆ formatVarNameStyle()

std::string OutputGNU::formatVarNameStyle ( std::string const & strToFormat ) const

protected

◆ initializeSpecificOutput() [1/2]

virtual void OutputGNU::initializeSpecificOutput ( )

inlinevirtual

Reimplemented from Output.

Reimplemented in OutputGlobalGNU, and OutputProbeGNU.

◆ initializeSpecificOutput() [2/2]

virtual void OutputGNU::initializeSpecificOutput ( std::vector< CellInterface * > * )

inlinevirtual

Reimplemented from Output.

Reimplemented in OutputBoundaryGNU.

◆ printBlocGnuplot()

void OutputGNU::printBlocGnuplot	(	std::ofstream &	fileStream,
		int &	index,
		const int &	dim
	)

protected

◆ writeResults() [1/2]

void OutputGNU::writeResults	(	Mesh *	mesh,
		std::vector< Cell * > *	cellsLvl
	)

virtual

Reimplemented from Output.

Reimplemented in OutputProbeGNU, OutputGlobalGNU, and OutputCutGNU.

◆ writeResults() [2/2]

virtual void OutputGNU::writeResults ( std::vector< CellInterface * > * )

inlinevirtual

Reimplemented from Output.

Reimplemented in OutputBoundaryGNU, OutputBoundaryAllGNU, and OutputBoundaryFluxGNU.

◆ writeScriptGnuplot() [1/2]

void OutputGNU::writeScriptGnuplot ( const int & dim )

protected

◆ writeScriptGnuplot() [2/2]

void OutputGNU::writeScriptGnuplot ( const std::string & varName )

protected

Member Data Documentation

◆ m_fileNameVisu

std::string OutputGNU::m_fileNameVisu

protected

◆ m_folderScriptGnuplot

std::string OutputGNU::m_folderScriptGnuplot

protected

The documentation for this class was generated from the following files:

/Users/fabien/depotsSephiroth/gitLab/ECOGEN/ecogen/src/InputOutput/OutputGNU.h
/Users/fabien/depotsSephiroth/gitLab/ECOGEN/ecogen/src/InputOutput/OutputGNU.cpp

Public Member Functions

Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

◆ OutputGNU() [1/3]

◆ OutputGNU() [2/3]

◆ OutputGNU() [3/3]

◆ ~OutputGNU()

Member Function Documentation

◆ createFilenameGNU()

◆ formatVarNameStyle()

◆ initializeSpecificOutput() [1/2]

◆ initializeSpecificOutput() [2/2]

◆ printBlocGnuplot()

◆ writeResults() [1/2]

◆ writeResults() [2/2]

◆ writeScriptGnuplot() [1/2]

◆ writeScriptGnuplot() [2/2]

Member Data Documentation

◆ m_fileNameVisu

◆ m_folderScriptGnuplot