#include <MeshCartesianAMR.h>

Inherits MeshCartesian.

Public Member Functions
	MeshCartesianAMR (double lX, int numberCellsX, double lY, int numberCellsY, double lZ, int numberCellsZ, std::vector< stretchZone > stretchX, std::vector< stretchZone > stretchY, std::vector< stretchZone > stretchZ, int lvlMax=0, double criteriaVar=1.e10, bool varRho=false, bool varP=false, bool varU=false, bool varAlpha=false, double xiSplit=1., double xiJoin=1.)

virtual	~MeshCartesianAMR ()

virtual int	initializeGeometrie (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, const int &restartSimulation, bool, std::string ordreCalcul)
	renvoi le number de dimensions (1,2 ou 3)

void	initializeGeometrieAMR (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, const int &restartSimulation, std::string ordreCalcul)

void	assignElementProperties (TypeMeshContainer< Cell * > &cells, std::vector< decomposition::Key< 3 > > &keys)

void	createCellInterfacesFacesAndGhostCells (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, std::string ordreCalcul)

virtual void	procedureRaffinementInitialization (TypeMeshContainer< Cell * > cellsLvl, TypeMeshContainer< Cell > cellsLvlGhost, TypeMeshContainer< CellInterface > cellInterfacesLvl, const std::vector< AddPhys > &addPhys, int &nbCellsTotalAMR, std::vector< GeometricalDomain * > &domains, Eos *eos, const int &restartSimulation, std::string ordreCalcul, std::vector< GeometricalDomain > &solidDomains)

virtual void	procedureRaffinement (TypeMeshContainer< Cell * > cellsLvl, TypeMeshContainer< Cell > cellsLvlGhost, TypeMeshContainer< CellInterface > cellInterfacesLvl, const int &lvl, const std::vector< AddPhys > &addPhys, int &nbCellsTotalAMR, Eos **eos)

virtual std::string	whoAmI () const

virtual void	writeHeaderPiece (std::ofstream &fileStream, TypeMeshContainer< Cell * > *cellsLvl) const

virtual void	getNodes (std::vector< double > &dataset, std::vector< Cell * > *cellsLvl) const

virtual void	getConnectivity (std::vector< double > &dataset, std::vector< Cell * > *cellsLvl) const

virtual void	getOffsets (std::vector< double > &dataset, std::vector< Cell * > *cellsLvl) const

virtual void	getTypeCell (std::vector< double > &dataset, std::vector< Cell * > *cellsLvl) const

virtual void	getData (TypeMeshContainer< Cell * > *cellsLvl, std::vector< double > &dataset, const int var, int phase) const

virtual void	setDataSet (std::vector< double > &dataset, TypeMeshContainer< Cell * > *cellsLvl, const int var, int phase) const

virtual void	refineCellAndCellInterfaces (Cell cell, const std::vector< AddPhys > &addPhys, int &nbCellsTotalAMR)

virtual void	printDomainDecomposition (std::ofstream &fileStream)

virtual void	readDomainDecomposition (std::ifstream &fileStream)

virtual int	getLvlMax () const

virtual void	initializePersistentCommunications (const TypeMeshContainer< Cell * > &cells, std::string ordreCalcul)

virtual void	finalizeParallele (const int &lvlMax)

virtual void	parallelLoadBalancingAMR (TypeMeshContainer< Cell * > cellsLvl, TypeMeshContainer< Cell > cellsLvlGhost, TypeMeshContainer< CellInterface > cellInterfacesLvl, std::string ordreCalcul, const std::vector< AddPhys > &addPhys, Eos *eos, int &nbCellsTotalAMR, std::vector< GeometricalDomain > &solidDomains, bool init=false)

virtual void	computePotentialBalancing (TypeMeshContainer< Cell * > *cellsLvl, bool init, int lvl, bool &balance, std::vector< typename decomposition::Key< 3 >::value_type > &indicesSendStartGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesSendEndGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesReceiveStartGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesReceiveEndGlobal)

virtual void	balance (TypeMeshContainer< Cell * > cellsLvl, TypeMeshContainer< Cell > cellsLvlGhost, TypeMeshContainer< CellInterface > cellInterfacesLvl, std::string ordreCalcul, const std::vector< AddPhys > &addPhys, Eos *eos, int &nbCellsTotalAMR, std::vector< typename decomposition::Key< 3 >::value_type > &indicesSendStartGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesSendEndGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesReceiveStartGlobal, std::vector< typename decomposition::Key< 3 >::value_type > &indicesReceiveEndGlobal, std::vector< GeometricalDomain > &solidDomains)

Public Member Functions inherited from MeshCartesian
	MeshCartesian (double lX, int numberCellsX, double lY, int numberCellsY, double lZ, int numberCellsZ, std::vector< stretchZone > stretchX, std::vector< stretchZone > stretchY, std::vector< stretchZone > stretchZ)

virtual	~MeshCartesian ()

virtual void	assignLimits (std::vector< BoundCond * > &boundCond)

void	getIJK (const int &index, int &i, int &j, int &k) const

void	construitIGlobal (const int &i, const int &j, const int &k, int &index) const

void	meshStretching ()

void	initializeGeometrieMonoCpu (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< CellInterface * > &cellInterfaces, std::string ordreCalcul)

void	initializeGeometrieParallele (TypeMeshContainer< Cell * > &cells, TypeMeshContainer< Cell * > &cellsGhost, TypeMeshContainer< CellInterface * > &cellInterfaces, std::string ordreCalcul)

void	decoupageParallele (std::string ordreCalcul, TypeMeshContainer< Cell * > &cells)

virtual void	setImmersedBoundaries (TypeMeshContainer< CellInterface * > *cellInterfacesLvl, std::string ordreCalcul) const

virtual int	getNumberCellsY ()

virtual int	getNumberCellsZ ()

virtual std::string	getStringExtent (bool global=false) const

virtual void	getCoord (std::vector< double > &dataset, Axis axis) const

Public Member Functions inherited from Mesh
	Mesh ()

virtual	~Mesh ()

const int &	getProblemDimension () const

const int &	getNumberCells () const

const int &	getNumberCellsTotal () const

const int &	getNumberFaces () const

const int &	getNumFichier () const

virtual double	getdX () const

virtual double	getdY () const

virtual double	getdZ () const

const TypeM &	getType () const

void	writeResultsGnuplot (std::vector< Cell * > cellsLvl, std::ofstream &fileStream, GeometricObject objet=0, bool recordPsat=false) const

virtual void	writeHeaderPiece (std::ofstream &, std::vector< Cell * > *) const

virtual void	getData (std::vector< Cell * > *, std::vector< double > &, const int, int) const
	Extracting data for printing results.

virtual void	setDataSet (std::vector< double > &, std::vector< Cell * > *, const int, int) const
	Extracting data for printing results.

virtual void	extractAbsVelocityMRF (std::vector< Cell * > , std::vector< double > &, Source ) const
	Extracting absolute velocity for specific Moving Reference Frame computations.

virtual void	extractReferenceLength (std::vector< Cell * > *, std::vector< double > &) const

virtual void	procedureRaffinementInitialization (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const std::vector< AddPhys > &, int &nbCellsTotalAMR, std::vector< GeometricalDomain * > &, Eos *, const int &, std::string, std::vector< GeometricalDomain > &)

virtual void	procedureRaffinement (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , const int &, const std::vector< AddPhys > &, int &, Eos **)

virtual void	parallelLoadBalancingAMR (std::vector< Cell * > , TypeMeshContainer< Cell > , std::vector< CellInterface > , std::string, const std::vector< AddPhys > &, Eos *, int &, std::vector< GeometricalDomain > &, bool=false)

virtual std::string	getMeshExtension () const

virtual void	initCpuMeshSequential (TypeMeshContainer< Cell * > &, std::string &)
	Initialize mesh of a single partition for restart with mesh mapping option.

virtual void	initCpuMeshParallel (TypeMeshContainer< Cell * > &, std::string &, int)
	Initialize mesh of a single partition of a partionned mesh for restart with mesh mapping option.

Private Attributes
int	m_lvlMax
	Niveau maximal sur l arbre AMR (si m_lvlMax = 0, pas d AMR)

double	m_criteriaVar
	Value of criteria to not pass on the variation of a variable for coarsening or refining (put xi=1.)

bool	m_varRho

bool	m_varP

bool	m_varU

bool	m_varAlpha
	Choice on which variation we coarsen or refine.

double	m_xiSplit

double	m_xiJoin
	Value of xi to split or join the cells.

decomposition::Decomposition	m_decomp
	Parallel domain decomposition based on keys.

Additional Inherited Members
Protected Attributes inherited from MeshCartesian
TypeMeshContainer< Element * >	m_elements
	Vector of element objects: Contains geometrical attributes.

TypeMeshContainer< Face * >	m_faces
	Vector of face objects (between two elements or at boundaries): Contains geometrical attributes.

double	m_lX

double	m_lY

double	m_lZ

int	m_numberCellsX

int	m_numberCellsY

int	m_numberCellsZ

int	m_numberCellsXGlobal

int	m_numberCellsYGlobal

int	m_numberCellsZGlobal

std::vector< double >	m_dXi

std::vector< double >	m_dYj

std::vector< double >	m_dZk

std::vector< double >	m_posXi

std::vector< double >	m_posYj

std::vector< double >	m_posZk

std::vector< stretchZone >	m_stretchX

std::vector< stretchZone >	m_stretchY

std::vector< stretchZone >	m_stretchZ

int	m_numberCpuX

int	m_numberCpuY

int	m_numberCpuZ

int	m_CpuCoordX

int	m_CpuCoordY

int	m_CpuCoordZ

int	m_offsetX

int	m_offsetY

int	m_offsetZ

int	m_numberBoundCondInit

BoundCond *	m_limXm

BoundCond *	m_limXp

BoundCond *	m_limYm

BoundCond *	m_limYp

BoundCond *	m_limZm

BoundCond *	m_limZp

Protected Attributes inherited from Mesh
int	m_numFichier

int	m_problemDimension

int	m_numberElements

int	m_numberFacesTotal

int	m_numberCellsCalcul

int	m_numberCellsTotal

TypeM	m_type

Constructor & Destructor Documentation

◆ MeshCartesianAMR()

MeshCartesianAMR::MeshCartesianAMR	(	double	lX,
		int	numberCellsX,
		double	lY,
		int	numberCellsY,
		double	lZ,
		int	numberCellsZ,
		std::vector< stretchZone >	stretchX,
		std::vector< stretchZone >	stretchY,
		std::vector< stretchZone >	stretchZ,
		int	lvlMax = `0`,
		double	criteriaVar = `1.e10`,
		bool	varRho = `false`,
		bool	varP = `false`,
		bool	varU = `false`,
		bool	varAlpha = `false`,
		double	xiSplit = `1.`,
		double	xiJoin = `1.`
	)

◆ ~MeshCartesianAMR()

MeshCartesianAMR::~MeshCartesianAMR ( )

virtual

Member Function Documentation

◆ assignElementProperties()

void MeshCartesianAMR::assignElementProperties	(	TypeMeshContainer< Cell * > &	cells,
		std::vector< decomposition::Key< 3 > > &	keys
	)

◆ balance()

void MeshCartesianAMR::balance	(	TypeMeshContainer< Cell * > *	cellsLvl,
		TypeMeshContainer< Cell * > *	cellsLvlGhost,
		TypeMeshContainer< CellInterface * > *	cellInterfacesLvl,
		std::string	ordreCalcul,
		const std::vector< AddPhys * > &	addPhys,
		Eos **	eos,
		int &	nbCellsTotalAMR,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesSendStartGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesSendEndGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesReceiveStartGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesReceiveEndGlobal,
		std::vector< GeometricalDomain * > &	solidDomains
	)

virtual

◆ computePotentialBalancing()

void MeshCartesianAMR::computePotentialBalancing	(	TypeMeshContainer< Cell * > *	cellsLvl,
		bool	init,
		int	lvl,
		bool &	balance,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesSendStartGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesSendEndGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesReceiveStartGlobal,
		std::vector< typename decomposition::Key< 3 >::value_type > &	indicesReceiveEndGlobal
	)

virtual

◆ createCellInterfacesFacesAndGhostCells()

void MeshCartesianAMR::createCellInterfacesFacesAndGhostCells	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< Cell * > &	cellsGhost,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		std::string	ordreCalcul
	)

◆ finalizeParallele()

void MeshCartesianAMR::finalizeParallele ( const int & lvlMax )

virtual

Reimplemented from Mesh.

◆ getConnectivity()

void MeshCartesianAMR::getConnectivity	(	std::vector< double > &	dataset,
		std::vector< Cell * > *	cellsLvl
	)		const

virtual

Reimplemented from Mesh.

◆ getData()

void MeshCartesianAMR::getData	(	TypeMeshContainer< Cell * > *	cellsLvl,
		std::vector< double > &	dataset,
		const int	var,
		int	phase
	)		const

virtual

Reimplemented from MeshCartesian.

◆ getLvlMax()

virtual int MeshCartesianAMR::getLvlMax ( ) const

inlinevirtual

Reimplemented from Mesh.

◆ getNodes()

void MeshCartesianAMR::getNodes	(	std::vector< double > &	dataset,
		std::vector< Cell * > *	cellsLvl
	)		const

virtual

Reimplemented from Mesh.

◆ getOffsets()

void MeshCartesianAMR::getOffsets	(	std::vector< double > &	dataset,
		std::vector< Cell * > *	cellsLvl
	)		const

virtual

Reimplemented from Mesh.

◆ getTypeCell()

void MeshCartesianAMR::getTypeCell	(	std::vector< double > &	dataset,
		std::vector< Cell * > *	cellsLvl
	)		const

virtual

Reimplemented from Mesh.

◆ initializeGeometrie()

int MeshCartesianAMR::initializeGeometrie	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< Cell * > &	cellsGhost,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		const int &	restartSimulation,
		bool	pretraitementParallele,
		std::string	ordreCalcul
	)

virtual

renvoi le number de dimensions (1,2 ou 3)

Reimplemented from MeshCartesian.

◆ initializeGeometrieAMR()

void MeshCartesianAMR::initializeGeometrieAMR	(	TypeMeshContainer< Cell * > &	cells,
		TypeMeshContainer< Cell * > &	cellsGhost,
		TypeMeshContainer< CellInterface * > &	cellInterfaces,
		const int &	restartSimulation,
		std::string	ordreCalcul
	)

◆ initializePersistentCommunications()

void MeshCartesianAMR::initializePersistentCommunications	(	const TypeMeshContainer< Cell * > &	cells,
		std::string	ordreCalcul
	)

virtual

Reimplemented from Mesh.

◆ parallelLoadBalancingAMR()

void MeshCartesianAMR::parallelLoadBalancingAMR	(	TypeMeshContainer< Cell * > *	cellsLvl,
		TypeMeshContainer< Cell * > *	cellsLvlGhost,
		TypeMeshContainer< CellInterface * > *	cellInterfacesLvl,
		std::string	ordreCalcul,
		const std::vector< AddPhys * > &	addPhys,
		Eos **	eos,
		int &	nbCellsTotalAMR,
		std::vector< GeometricalDomain * > &	solidDomains,
		bool	init = `false`
	)

virtual

◆ printDomainDecomposition()

void MeshCartesianAMR::printDomainDecomposition ( std::ofstream & fileStream )

virtual

Reimplemented from Mesh.

◆ procedureRaffinement()

void MeshCartesianAMR::procedureRaffinement	(	TypeMeshContainer< Cell * > *	cellsLvl,
		TypeMeshContainer< Cell * > *	cellsLvlGhost,
		TypeMeshContainer< CellInterface * > *	cellInterfacesLvl,
		const int &	lvl,
		const std::vector< AddPhys * > &	addPhys,
		int &	nbCellsTotalAMR,
		Eos **	eos
	)

virtual

◆ procedureRaffinementInitialization()

void MeshCartesianAMR::procedureRaffinementInitialization	(	TypeMeshContainer< Cell * > *	cellsLvl,
		TypeMeshContainer< Cell * > *	cellsLvlGhost,
		TypeMeshContainer< CellInterface * > *	cellInterfacesLvl,
		const std::vector< AddPhys * > &	addPhys,
		int &	nbCellsTotalAMR,
		std::vector< GeometricalDomain * > &	domains,
		Eos **	eos,
		const int &	restartSimulation,
		std::string	ordreCalcul,
		std::vector< GeometricalDomain * > &	solidDomains
	)

virtual

◆ readDomainDecomposition()

void MeshCartesianAMR::readDomainDecomposition ( std::ifstream & fileStream )

virtual

Reimplemented from Mesh.

◆ refineCellAndCellInterfaces()

void MeshCartesianAMR::refineCellAndCellInterfaces	(	Cell *	cell,
		const std::vector< AddPhys * > &	addPhys,
		int &	nbCellsTotalAMR
	)

virtual

Reimplemented from Mesh.

◆ setDataSet()

void MeshCartesianAMR::setDataSet	(	std::vector< double > &	dataset,
		TypeMeshContainer< Cell * > *	cellsLvl,
		const int	var,
		int	phase
	)		const

virtual

Reimplemented from MeshCartesian.

◆ whoAmI()

std::string MeshCartesianAMR::whoAmI ( ) const

virtual

Reimplemented from MeshCartesian.

◆ writeHeaderPiece()

void MeshCartesianAMR::writeHeaderPiece	(	std::ofstream &	fileStream,
		TypeMeshContainer< Cell * > *	cellsLvl
	)		const

virtual

Member Data Documentation

◆ m_criteriaVar

double MeshCartesianAMR::m_criteriaVar

private

Value of criteria to not pass on the variation of a variable for coarsening or refining (put xi=1.)

◆ m_decomp

decomposition::Decomposition MeshCartesianAMR::m_decomp

private

Parallel domain decomposition based on keys.

◆ m_lvlMax

int MeshCartesianAMR::m_lvlMax

private

Niveau maximal sur l arbre AMR (si m_lvlMax = 0, pas d AMR)

◆ m_varAlpha

bool MeshCartesianAMR::m_varAlpha

private

Choice on which variation we coarsen or refine.

◆ m_varP

bool MeshCartesianAMR::m_varP

private

◆ m_varRho

bool MeshCartesianAMR::m_varRho

private

◆ m_varU

bool MeshCartesianAMR::m_varU

private

◆ m_xiJoin

double MeshCartesianAMR::m_xiJoin

private

Value of xi to split or join the cells.

◆ m_xiSplit

double MeshCartesianAMR::m_xiSplit

private

The documentation for this class was generated from the following files:

/Users/fabien/depotsSephiroth/gitLab/ECOGEN/ecogen/src/Meshes/MeshCartesianAMR.h
/Users/fabien/depotsSephiroth/gitLab/ECOGEN/ecogen/src/Meshes/MeshCartesianAMR.cpp

Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ MeshCartesianAMR()

◆ ~MeshCartesianAMR()

Member Function Documentation

◆ assignElementProperties()

◆ balance()

◆ computePotentialBalancing()

◆ createCellInterfacesFacesAndGhostCells()

◆ finalizeParallele()

◆ getConnectivity()

◆ getData()

◆ getLvlMax()

◆ getNodes()

◆ getOffsets()

◆ getTypeCell()

◆ initializeGeometrie()

◆ initializeGeometrieAMR()

◆ initializePersistentCommunications()

◆ parallelLoadBalancingAMR()

◆ printDomainDecomposition()

◆ procedureRaffinement()

◆ procedureRaffinementInitialization()

◆ readDomainDecomposition()

◆ refineCellAndCellInterfaces()

◆ setDataSet()

◆ whoAmI()

◆ writeHeaderPiece()

Member Data Documentation

◆ m_criteriaVar

◆ m_decomp

◆ m_lvlMax

◆ m_varAlpha

◆ m_varP

◆ m_varRho

◆ m_varU

◆ m_xiJoin

◆ m_xiSplit