Export Gmsh mesh to version 2 file format
Since ECOGEN mainly supports Gmsh [GR09] [GR09] version 2 mesh files, and the latest Gmsh software currently uses version 4 by default, we recommend exporting the mesh file to version 2.
To do so, use File -> Export, choose Gmsh version 2 ASCII format and make sure additionnal options are not checked.

Fig. 38 Gmsh export window.
If the mesh has to be partitionned, check also the option Create ghost cells to have a mesh file fully compatible with ECOGEN.

Fig. 39 Gmsh partition window.